thor.pp.load_cellprofiler

thor.pp.load_cellprofiler(nuclei_path)

Load nuclei segmentation result from a cellprofiler output file.

Parameters:

nuclei_path (str) – Path to the nuclei segmentation result file.

Returns:

• labels (numpy.ndarray) – Nuclei segmentation labels (numpy array: n_cells)

• nuclei_centroids (numpy.ndarray) – Nuclei positions (numpy array: n_cells x 2)