thor.pl.fringe
- thor.pl.fringe(data=None, genes=None, cmap='viridis', lw=5, annotate=False, annot_bbox=None, text_offset_x=0.08, text_offset_y=0, text_size=8, ax=None)[source]
Plot log2foldchange of gene expression against distance from the baseline.
- Parameters:
data (
pandas.DataFrame) – Rows are windows/bins. Columns are distance and all the genes (Default value =None)genes (
list) – List of genes for plotting (Default value =None)cmap (
str) – Colormap name in matplotlib for plotting the genes. (Default value = ‘viridis’)lw (
float) – line width. (Default value = 5)annotate (
bool) – Whether to annotate the lines with the gene names. (Default value =False)text_offset_x (
float) – Offset applied to the x position of the annotation texts. (Default value = 0.08)text_offset_y (
float) – Offset applied to the y position of the annotation texts. (Default value = 0)text_size (
float) – Size of the annotation texts. (Default value = 8)ax (
matplotlib.axes.Axes) – Matplotlib axis passed on for plotting (Default value =None)
- Returns:
Matplotlib axis
- Return type: