thor.analy.adata_to_mtx_conversion

thor.analy.adata_to_mtx_conversion(adata: AnnData, save_path: str | None = None, layer: str | None = None) → None[source]

Convert AnnData object to matrix market format.

Parameters:

  • adata (anndata.AnnData) – Annotated data matrix.

  • save_path (str or None, optional) – Directory to save the output files. Default is None. If None, data will be saved in the current working directory.

  • layer (str or None, optional) – Name of the layer in adata to use as input data. Default is None. If None, the X layer will be used.

Returns:

Results are saved in the current working directory.

matrix.mtxfile

Matrix market format file containing gene expression data.

genes.tsvfile

Gene names file.

barcodes.tsvfile

Cell barcode names file.

Return type:

None